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Contact : sayak@bioinfopresidencycollegekolkata.edu.in

TARMi is a web server for identifying microRNA target site. TARMi predicts miRNA target sites in genomic sequences based on three algorithms. It is based on feature identification (seed sequence) and alignment scores, where the sequence showing the maximum score is selected as target .The predicted targets are then further classified using SVM Light and have been tested using the experimentally validated miRNA targets at TARbase.

Users have to predict a miRNA: target. For this an user can input Name, E-mail ID, miRNA sequences and UTR sequences’ in the text boxes (plain format) given below.
USER’S NAME :
USER’S E-MAIL ID :
MicroRNA SEQUENCES :
mRNA UTR SEQUENCES :
 
DATA EXAMPLES

MicroRNA Sequence : cauugcacuugucucggucuga
mRNA UTR Sequence :
AACTGGAAGCTGTCCACCCACCGGAAGCGCTCTTTACTTGGTCGCTGGCCACCCCAGTGTTTGGAAAAAAATCTCTGGGCTTCGACTGCTGCCAGGGAGGAGCTGCTGCAAGCCAGAGGGAGGAAGGGGGAGAATACGAACAGCCTGGTGGTGTCGGGTGTTGGTGGGTAGAGTTAGTTCCTGTGAACAATGCACTGGGAAGGGTGGAGATCAGGTCCCGGCCTGGAATATATTTTCTACCCCCCTGGAGCTTTGATTTTGCACTGAGCCAAAGGTCTAGCATTGTCAAGCTCCTAAAGGGTTCATTTGGCCCCTCCTCAAAGACTAATGTCCCCATGTGAAAGCGTCTCTTTGTCTGGAGCTTTGAGGAGATGTTTTCCTTCACTTTAGTTTCAAACCCAAGTGAGTGTGTGCACTTCTGCTTCTTTAGGGATGCCCTGTACATCCCACACCCCACCCTCCCTTCCCTTCATACCCCTCCTCAACGTTCTTTTACTTTATACTTTAACTACCTGAGAGTTATCAGAGCTGGGGTTGTGGAATGATCGATCATCTATAGCAAATAGGCTATGTTGAGTACGTAGGCTGTGGGAAGATGAAGATGGTTTGGAGGTGTAAAACAATGTCCTTCGCTGAGGCCAAAGTTTCCATGTAAGCGGGATCCGTTTTTTGGAATTTGGTTGAAGTCACTTTGATTTCTTTAAAAAACATCTTTTCAATGAAATGTGTTACCATTTCATATCCATTGAAGCCGAAATCTGCATAAGGAAGCCCACTTTATCTAAATGATATTAGCCAGGATCCTTGGTGTCCTAGGAGAAACAGACAAGCAAAACAAAGTGAAAACCGAATGGATTAACTTTTGCAAACCAAGGGAGATTTCTTAGCAAATGAGTCTAACAAATATGACATCTGTCTTTGGCACTTTTGTTGATGTTTATTTCAGAATGTTGTGTGATTCATTTCAAGCAACAACATGGTTGTATTTTGTTGTGTTAAAAGTACTTTTCTTGATTTTTGAATGTATTTGTTTCAGCAGAAGTCATTTTATTGGATTTTTCTAACCCGTGTTAACACCATTGAATGTGTATTTCTTAAGAAAATACCACCCTCTTGTGCCCTTAAAAGCATTACTTTAACTGGTAGGGAACGCCAGAAACTTTTCAGTCCAGCTATTCATTAGATAGTAATTGAAGATATGTATAAATATTACAAAGAATAAAAATATATTACTGTCTCTTTAGTATGGTTTTCAGTGCAATTAAACCGAGAGATGTCTTGTTTTTTTAAAAAGAATAGTATTTAATAGGTTTCTGACTTTTGTGGATCATTTTGCACATAGCTTTATCAACTTTTAAAC
 
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